Friday, January 19, 2007

Protozoa can be classified into Amoeba, flagellates, sporozoa and Helminths.
Protozoa
A group of eukaryotic microorganisms traditionally classified in the animal kingdom. Although the name signifies primitive animals, some Protozoa (phytoflagellates and slime molds) show enough plantlike characteristics to justify claims that they are plants.
Protozoa are almost as widely distributed as bacteria. Free-living types occur in soil, wet sand, and in fresh, brackish, and salt waters. Protozoa of the soil and sand live in films of moisture on the particles.


Fungi can be classified under molds and yeasts.


Fungal infections
Several thousand species of fungi have been described, but fewer than 100 are routinely associated with invasive diseases of humans. In general, healthy humans have a very high level of natural immunity to fungi, and most fungal infections are mild and self-limiting. Intact skin and mucosal surfaces and a functional immune system serve as the primary barriers to colonization by these organisms, but these barriers are sometimes breached.

Only a handful of fungi cause significant disease in healthy individuals. Once established, these diseases can be classified according to the tissues that are initially colonized.

Superficial mycoses
Where the skin is involved, the infections are limited to the outermost layers of the stratum corneum; in the case of hairs, the infection is limited to the cuticle. In general, these infections cause no physical discomfort to the patient, and the disease is brought to the attention of the physician for cosmetic reasons.

Cutaneous mycoses
The cutaneous mycoses are caused by a homogeneous group of keratinophilic fungi termed the dermatophytes. Species within this group are capable of colonizing the integument and its appendages (the hair and the nails). In general, the infections are limited to the nonliving keratinized layers of skin, hair, and nails, but a variety of pathologic changes can occur depending on the etiologic agent, site of infection, and immune status of the host. The diseases are collectively called the dermatophytoses, ringworms, or tineas. They account for most of the fungal infections of humans.

Subcutaneous mycoses
The subcutaneous mycoses include a wide spectrum of infections caused by a heterogeneous group of fungi. The infections initially involve the deeper layers of the dermis and subcutaneous tissues, but they eventually extend into the epidermis. The lesions usually remain localized or spread slowly.

Systemic mycoses
The initial focus of the systemic mycoses is the lung. The vast majority of cases in healthy, immunologically competent individuals are asymptomatic or of short duration and resolve rapidly, accompanied in the host by a high degree of specific resistance. However, in immunosuppressed patients the infection can lead to life-threatening disease.

http://www.answers.com/
Protozoa

Taenia solium
Taenia solium, also called the pork tapeworm, is a cyclophyllid cestode in the family Taeniidae. It infects pigs and humans in Asia, Africa, the Philippines, Latin America, parts of Southern Europe, and pockets of North America.

www.wikipedia.com

Pathogenesis
This infection is caused by ingestion of eggs shed in the feces of a human tapeworm carrier. Humans are infected either by ingestion of food contaminated with feces containing eggs, or by autoinfection. In the latter case, a human infected with adult T. solium can ingest eggs produced by that tapeworm, either through fecal contamination or, possibly, from proglottids carried into the stomach by reverse peristalsis. Once eggs are ingested, oncospheres hatch in the intestine, invade the intestinal wall, and migrate to striated muscles, as well as the brain, liver, and other tissues, where they develop into cysticerc.

Signs and Symptoms
Larvae- T. solium Cysticercus cellulosae
· Mainly develop in the subcutaneous tissues, but infections in both the Central Nervous System (C.N.S.) and ocular tissues are also very common.
· Infection of the C.N.S. may cause severe pain, paralysis, optical and/or psychic disturbances and epileptic convulsions, mainly due to mechanical pressure as the larvae develop. Later there may be loss of consciousness and even death.
· Infections involving the eye may give rise to discomfort, and can cause detachment of the retina.

Adult
· A slight degree of mucosal inflammation.
· Constipation, epigastric pain and diarrhoea, are present.
· Very rarely there may be perforation of the intestinal wall, with subsequent peritonitis may occur.
· Autoinfection due to reverse-peristalsis resulting in cysticercosis, it being estimated that approximately 25% of cases of Cysticercus cellulosae infections in man being acquired by this route.

Treatment
Infection with T. solium adults is treated with niclosamide. If cysticercosis is the cause, it is important to wash one's hands before eating and to suppress vomiting if a patient may be infected with T. solium.

Prevention
Infection may be prevented with proper disposal of human feces around pigs, cooking meat thoroughly, and/or freezing the meat at -10oC for 5 days.
www.wikipedia.com

Taenia saginata
The beef tapeworm. The most common of the big tapeworms that parasitizes people, contracted from infected raw or rare beef. Can grow to be 12-25 feet (3.6-7.5 m) long in the human intestine. Also known as the African tapeworm.


www.answers.com

Pathogenesis
Humans are the only known definitive hosts for T. saginata. The life cycle begins with the ingestion of raw or undercooked beef containing T. saginata larvae. The larvae gets digested out of the beef in the human intestinal system. The worm then attaches on the intestinal mucosa of the upper small intestine. The tapeworm will digest food and grow longer. Mature tapeworms will release 10 single gravid proglottids daily via the feces or will spontaneous be released from the anus. Proglottids are motile and will shed eggs as it moves. These eggs (containing the oncosphere) can remain viable for several days to weeks in sewage, rivers, and pastures. The beef tapewrom can only develop in humans as adult worm derived from the cysticercus developed in beef. Eggs from ensuing adult worm develop only in cattle or other herbivores and cannot cause human cysticercosis.

Signs and Symptoms
· Loss of appetite or feeling of fullness, nausea, vomiting, diarrhea.
· Vitamin deficiency due to excessive absorption of nutrients by the parasite

Treatment
Niclosamide, used to treat many different kinds of infections with trematodes and adult tapeworms, is the best drug.

Prevention
Proper disposal of feces and making sure that all meat has been cooked properly helps prevent the spread of disease. In Western societies, meat is inspected for parasites. Additionally, freezing the meat at -10oC for five days kills any worms and larvae.
http://www.path.cam.ac.uk
http://www.answers.com

Entamoeba histolytica


www.wikipedia.com

Pathogenesis
· The trophozoite emerges from the ingested cyst (metacyst) after activation of the excystation process in the stomach and duodenum.
· The metacyst divides rapidly producing 4 amebulae, each of which divides again to produce 8 small trophozoites per infective cyst, they pass to the cecum and produce a population of lumen-dwelling trophozoites.
· The trophozoites multiply by binary fission.

Signs and Symptoms
· Symptoms are usually gastrointestinal including diarrhea, vomiting, abdominal pain or discomfort and fever.
· Symptoms take from a few days to a few weeks to develop and manifest themselves, but usually it is about two to four weeks.
· Most infected people are asymptomatic but this disease has the potential to make the sufferer dangerously ill, especially if there is any suggestion of immunocompromise.
Infections that sometimes last for years may be accompanied by
· no symptoms (in the majority of cases),
· vague gastrointestinal distress,
· dysentery (with blood and mucus).

Treatment
· Asyptomatic(cyst-passing) amebiasis can be treated with iodoquinol(Yodoxin), or diloxanide furoate (Furamide), or paramomycin (Humatin)
· As for symptomatic amebiasis, metronidazole is used even though it is mutagenic in bacteria.
· Mild to moderate intestinal disease, give metronidazole or tindzaole (Fasigyn)
· Severe intestinal disease, give regimen described above or give dehydroemetine

Prevention
· Ingested through contaminated water
· Flies incriminated in areas of fecal population
· Asymptomatic cyst passers are the main source if contamination
· Control measures consist of improving environmental contamination and food sanitation.
· Treatment of carriers is controversial, although it is agreed that they should be barred from food handling.

Giardia lamblia


www.wikepedia.com


Pathogenesis
· Only common pathogenic protozoan found in the duodenum and jejunum of humans
· Cause giardiasis
· Usually only weakly pathogenic for humans
· Cysts may be found in large numbers in the stools of entirely asymptomatic persons

Signs and Symptoms
· Stools are watery, semisolid, greasy, bulkly, and foul-smelling t various times during the course of infection
· Malaise, weakness, weight loss, abdominal cramps, distention, and flatulence can occur.
· Immunosuppressed individuals are especially liable to massive infection with severe clinical manifestations.
· Symptoms may continue for long periods

Treatment
· Metronidazole will clear 90% of G lamblia infections.
· Oral quinacrine hydrochloric (atabrine) and furazolidone (Furoxone) are alternatives
· Tinidazole (Fasigyn) used for 1 day treatment is widely and effectively used
· Treatment may be repeated if necessary

Prevention
· Ingestion of fecally contaminated food or water is the main mode of transmission.
· Thus, reducing this contamination is the best method of prevention.
· Filtering or purifying drinking water (iodine or boiling) in endemic areas is important as is the washing of fruits and vegetables that may have been contaminated.
www.wikipedia.com

Wuchereria Bancrofti



www.wikipedia.com


Pathogenesis
· W. bancrofti carry out their life cycle in two hosts.
· Human beings serve as the definitive host and mosquitoes as their intermediate hosts.
· The adult parasites reside in the lymphatics.
· The first stage larvae are known as microfilariae.
· The microfilaria are present in the circulation.
· The microfilaria migrate between the deep and the peripheral circulation.
· During the day they are present in the deep veins and during the night the migrate to the peripheral circulation.
· Next, the worm is transferred into a vector; the most common vectors are the mosquito species: Culex, Anopheles, Aedes, and Mansonia.
· Inside their second host, it matures into motile larvae.
· When its current host feeds, and it is egested into the blood stream of its new human host.
· The larvae moves to the lymph nodes, predominantly in the legs and genital area, and develops into adult worm over the course of a year.
· By this time, an adult female can produce microfilariae itself

Signs and Symptoms
· The onset of symptoms is slow
· Incubation period of 3- 12 months in which there is no symptoms
· Acute symptomatic stage—some swelling of the extremities may occur and this may be accompanied by pain, weakness of arms and legs, headache, and insomnia
· Other early symptoms include recurrent filarial fever, lymphadenitis, and retrograde lymphangitis
· Chronic signs include:
– Hydrocele (collection of fluid in the scrotal sac) most common clinical condition
– Chyluria (chyle in urine—milky appearance)
– Elephantiasis of the limbs, breast and genitalia

Treatment
· Drug of choice: Ivermectin
· Albendazole
· Diethylcarbamazine (DEC) (Hetrazan)
– Eliminates microfilariae from the blood and also can kill adults.
· Use of single-dose regimens of all three reduce W bancrofti microfilaremia, antigenemia, and clinical manifestations

Prevention
· Protect yourself from mosquito bites in endemic areas
– Use insect repellent
– Mosquito nets
· Educate people in endemic areas
www.wikipedia.com

Brugia Malayi
www.answers.com

Pathogenesis
· Infective The Brugia malayi parasites are found in Southeast Asia.
· Larvae are transmitted by infected biting arthropods during a blood meal.
· The larvae migrate to the appropriate site of the host's body, where they develop into microfilariae-producing adults.
· The adults dwell in various human tissues where they can live for several years. The agents of lymphatic filariasis reside in lymphatic vessels and lymph nodes.
· B. malayi dwells particularly in the lymphatics, as with Wuchereria bancrofti.
· The female worms produce microfilariae which circulate in the blood.
· The microfilariae infect mosquitoes.
· Inside the mosquito, the microfilariae develop in 1 to 2 weeks into infective filariform (third-stage) larvae.
· During a subsequent blood meal by the insect, the larvae infect the vertebrate host.
· They migrate to the lymphatics, where they develop into adults, a slow process than can require up to 18 months.

Signs and Symptoms
· Most of the signs and symptoms of filariasis are caused as a consequence of the adult worms living in the lymph system.
· Tissue damage caused by the worms restricts the normal flow of lymph fluid. This results in swelling, scarring, and infections.
· The legs and groin are most often affected.

Treatment
· Treatment consists of an annual single-dose of ivermectin and/or diethylcarbamazine (DEC).
· Albendazole is also effective in conjunction with either ivermectin or DEC

Prevention
· There is no vaccine for filariasis.
· Prevention centers on mass treatment with anti-filariasis drugs to prevent ingestion of larvae by mosquitoes, public health action to control mosquitoes, and individual action to avoid mosquito bites.
· To avoid being bitten by mosquitoes:
· If possible, stay inside between dusk and dark. This is when mosquitoes are most active in their search for food.
· When outside, wear long pants and long-sleeved shirts.
· Spray exposed skin with an insect repellent.

Plasmodium species
Plasmodium species are sporozoas that cause malaria in humans. It is transmitted by Anopheles mosquitoes. The four types of the plasmodium species are: P. falciparum, P. malariae, P.vivax and P. ovale. Of these types, P. falciparum is the most dangerous of these infections as P. falciparum malaria has the highest rates of complications and mortality. In addition, it accounts for 80% of all human malarial infections and 90% of the deaths. It is more prevalent in sub-Saharan Africa than in other regions of the world.

Pathogenesis
Exoerythrocytic Phase
Infection results from the bite of an infected female anopheles mosquito. Sporozoites liberated from the mosquito’s salivary glands rapidly (usually within 1 hr) enter hepatocytes in the liver. In there, they develop in two ways depending on the species of plasmodium:
· P. falciparum and P. malariae: parasites develop to a pre-erythrocytic schizont that eventually ruptures to release merozoites into the bloodstream à initiate erythrocytic infection in the peripheral blood
· P.vivax and P. ovale: some sporozoites develop into preerythrocytic schizonts while others lay dormant as hypnozoites. At a later time, the hypnozoites may become active, divide and form schizonts and merozoites à initiate erythrocytic infection in the peripheral blood.

Erythrocytic Phase
A merozoite released from a hepatic schizont invades an erythrocyte. Parasites in the red cells multiply in a species-characteristic fashion, breaking out of their host cells synchronously. Successive broods of merozoites appear at 48-hr intervals (P. vivax, P. ovale, P.falciparum) or every 72hrs (P. malariae).

The incubation period is includes the exoerythrocytic cycles (usually 20 and at least 1 or 2 exoerythrocytic cycles. Incubation period for P. falciparum and P. vivax is usually 10-15days, but it may be weeks or months. The incubation period of P. malariae averages about 28days.

Signs and Symptoms
General for all species
· An initial chill, lasting from 15mins to 1 hour
· Nausea, vomiting and headache
· Succeeding febrile stage, lasting several hours, is characterized by a spiking fever that will reach 40oC or more
· In the third stage (sweating), fever subsides.

In P.falciparum
· Splenomegaly
· Hepatomegly
· Normocytic anemia
· Periodicity for febrile episodes – 72hrs
· Pyrexia may last 8hrs or longer and may exceed 41°C
In P.vivax, P. malariae and P. ovale (Low-grade)
· Periodicity for febrile episodes – 48hrs

Plasmodium falciparum Plasmodium vivax
(http://neofronteras.com) (http://ww2.sjc.edu/)



Treatment
· Chloroquine is the drug of choice for treatment of all susceptible forms of malaria during acute attack.
· For falciparum malaria coma, use parenteral quinine dihydrochloride or quinidine until oral therapy is possible.
· Primaquine therapy should follow treatment for clinical malaria. (low course to be given to G6PD deficient individuals owing to the possibility of hemolytic anemia)
· For drug-resistant strains of P. falciparum, treat with quinine sulfate plus a single dose of pyrimethamine-sulfadoxine, with quinine plus clindamycin/doxycycline/tetracycline.
· For chloroquine-resistant P. falciparum malaria, alternatives used: mefloquine and halofantrine

Prevention
· Have personal protection (e.g. protective-clothing with long sleeves and trousers, repellents, netting around sleeping area)
· Suppressive prophylaxis with chloroquine phosphate or amodiaquine .


Fungi


Sporothrix schenckii
Pathogenesis
- Cutaneous or skin sporotrichosis
This is the most common form of this disease. Symptoms of this form include nodular lesions or bumps in the skin, at the point of entry and also along lymph nodes and vessels. The lesion starts off small and painless, and ranges in color from pink to purple. Left untreated, the lesion becomes larger and looks similar to a boil and more lesions will appear, until a chronic ulcer develops.
Usually, cutaneous sporotrichosis lesions occur in the finger, hand, and arm.

- Pulmonary sporotrichosis
This rare form of the disease occurs when S. schenckii spores are inhaled. Symptoms of pulmonary sporotrichosis include productive coughing, nodules and cavitations of the lungs, fibrosis, and swollen hilar lymph nodes. Patients with this form of sporotrichosis are prone to develop tuberculosis and pneumonia

- Disseminated sporotrichosis
When the infection spreads from the primary site to secondary sites in the body, the disease develops into a rare and critical form called disseminated sporotrichosis. The infection can spread to joints and bones (called osteoarticular sporotrichosis) as well as the central nervous system and the brain (called sporotrichosis meningitis).

Signs and symptoms
- Small and non-tender nodules are visible under the skin during the early stages of infection
- The nodules will then slowly enlarge and ulcerate
- Dark nodules would eventually emerge along the lymphatic channel that drains the infected area

Treatment
- Itraconazole and fluconazole are antifungal drugs which are usually used for treatment
- Amphotericin B can be used to treat Sporotrichosis via intravenous means

Epidemiology
- Sporothrix schenckii is naturally found in soil, hay, sphagnum moss, and plants
- Occurs worldwide (more common in tropical and subtropical America) in close association with plants (living or decomposing)
- Usually affects agricultural workers and those working in similar occupations as they handle with plants and trees


Aspergillus niger, Aspergillus flavus, Aspergillus fumigatus

Pathogenesis
· In immunopromised patients, the alveolar macrophages in the lung will engulf and destroy the conidia less effectively.
· This causes the conidia in the lung to swell and germinate, subsequently producing hyphae which invades the cavities or blood vessels.
· Eventually they would spread to the other organs of the body and thus allow the Aspergilli to proliferate in cavities within the lungs
· Aspergilloma (fungus balls) where Aspergilli grow in cavities within the lungs caused by Tuberculosis and produce aspergilloma
· Allergic bronchopulmonary aspergillosis (asthma) is caused by the infection of bronchi by Aspergillus sp
· Infections of the nasal sinuses, eyes, ears, skins & nails

Signs and symptoms
· Fever
· Cough
· Malaise
· Weight Loss
· Chest pain
· Dypsnea
· Vomitting
· Chills
· Difficulty in breathing
· May develop permanent lung scarring

Treatment
· Steroid can be consumed for allergic bronchopulmonary aspergillosis
· Amphotericin B or itraconazole can be used to treat aspergillosis
· Rapid adminstration of amphotericin B or voriconazole(native or lipid formulation) for invasive aspergillosis
· No vaccine or prophylactic drug available for the prevention of Aspergillus

Epidemiology
· Aspergillus sp is found in soil and can be transmitted through the inhalation of airborne spores
· Aspergillus flavus is seedborne and soilborne
· Active in high humidity (90-98%) and low soil moisture.
· Usually affects agricultural workers and those working in similar occupations as they handle with plants and trees

http://staff.vbi.vt.edu/pathport/pathinfo/pathogens/Aspergillus_flavus_Info.shtml

Trichophyton rubrum and Trichophyton metagrophytes

Pathogenesis
Both Trichophyton rubrum (T. rubrum) and Trichophyton metagrophytes (T. metagrophytes) invades the superficial keratin of the skin, and remains in this layer. Infection occurs from here. Proteins on the both the fungi cell wall inhibits the body immune response to the infection allowing the Fungi to thrive. T .rubrum cell wall proteins also reduce the skin growth, making the skin layer thin. These fungi both can cause athlete’s foot with red blisters and chronic scaling of the foot skin.

T.rubrum http://www.doctorfungus.comngus.com



T.mentagrophytes www.doctorfungus.com

Signs and Symptoms

· Dry scaly or white and soggy skin between the spaces of toes and fingers are a sign of fungi infection. This area can also feel itchy or have a burning or painful sensation.

· If left untreated, this may lead to a chronic infection that causes itching and mild to profuse scaling on the surface skin of the foot.

· If treatment is still not administered, this may lead to a severe case of athlete’s foot with red tender blisters appearing on the sole or the upper surface of the foot.


Prevention
Keep foot dry and airy by:

ü Avoid wearing nylon and acrylic socks but wear 100% cotton or wool socks
ü Wash and dry between your toes properly
ü Go barefoot or wear sandals to air feet in warm humid weather

· Practice good personal hygiene by:

ü Avoiding sharing towels, socks and shoes
ü Do not walk barefoot in public showers


Treatment

· If infection is found between toes and fingers, apply topical agents such as Miconazole for at least 2 to 4 weeks
· Chronic scaling can be treated with orally administered Griseofulvin
· Acute athlete’s foot can be treated using Burows solution, potassium permanganate or sliver nitrate.


www.doctorfungus.com

· Epidermophyton floccosum

Pathogenesis
Epidermophyton floccosum (E. floccosum) is the one of the common cause of skin and nail fungal infection in normal healthy individuals. The infection is restricted to the nonliving cornified layers of epidermis since it lacks the ability to penetrate the viable tissues of a healthy host. The infection is only restricted to keratinized (tough layers) of tissues. E. floccosum is a common cause of athlete's foot, fungal infection of the groin, toenails or the fingernails and ring worms.

Signs and Symptoms

1. Yellow, brittle, thickened and crumbly nails and leads to nails being damaged and exposure of the nail bed.
2. Tenderness and soreness of the skin around the groin region.
3. A white material slowly spreads beneath the nail surface.

Prevention

· Surgical removal of the nails to stop and prevent further infection
· Trim nails short and wipe feet dry after bathing. The application of antifungal powder also limits the fungal infection from occurring
· Wash and sun dry shoes regularly.

Treatment

· To treat the infection and to prevent any chances of relapse of the infection from occurring, antifungal drugs such as traconazole or terbinafine must be taken for a few months.


Microsporum canis (ringworm of scalp)

Pathogenesis
· Source of infection is an infected animal
· Can infect the skins and hair, caused Tinea captitis (scalp infections)
· Infections begin with hyphal invasions (contact with infected animals)of the skin of the scalp, with subsequent spread down the keratinized wall of the hair follicles
· Infection of the hair takes place just above the hair root
· The hyphae grow downward on the onoliving portion of the hair and at the same rate as the hair grows upward
· The infection produces dull gray, circulart patches of alopecia, scaling, and itching
· As the hair grows out of the follicles, the hyphae of M. species produce a chain of spores that form a sheath around the hair shaft (ectothrix).
· Theses spores impart a greenish to slivery fluorescence when the hairs are examined under Wood’s light (365nm).
· May also induce a severe inflammatory and hypersensitivity reactions called kerion

Signs and symptoms
· scalp will show hair loss or give a stubbly appearance
· slightly scaly but with little or no irritation skin
· ringworm may be present on the face or other parts of the body.
· a 6 to 9cm wide lesion will appear that may develop into a large rash.
· A kerion (a swollen mass discharging pus) will appear on the scalp, in severe cases. It may become inflamed and fill with fluid or pus, and may also be quite painful.
· Develop severe alopecia (baldness) and at this stage the scalp will often become infected further with Staphylococci bacteria.
· Swollen and tender lymph nodes of the neck
· In rare cases, there may also be a fever.


Prevention/ Treatment
· minimise direct contact with animals showing symptoms of ringworm, such as scaly, patchy skin.
· Oral antifungal medicine. However, if a large kerion has formed, the antifungal treatment may be supplemented with corticosteroids for a short period of time.
http://www.netdoctor.co.uk


Malassezia furfur
Causative agent of Pityriasis versicolor, seborrhoeic dermatitis and dandruff.

Pathogenesis
· naturally found on the skin surfaces of many animals and humans.
· the fungus requires fat to grow, hence it is most commonly in areas with many sebaceous glands: on the scalp, face, and upper part of the body.
· When the fungus grows too rapidly, the natural renewal of cells is disturbed and dandruff appears with itching (a similar process may also occur with other fungi or bacteria).

Signs and symptoms
· Discrete, serpentine, hyper or hypopigmented maculae occur in skin, usually on the chest, upper back, arms or abdomen.
· Lesion occurs as macular patches of discoloured skin that may enlarge and coalesce, but scaling, inflammation and irritation are minimal.

Prevention/ Treatment
· treated with topical or oral antifungal agents. Seborrhoeic dermatitis may also treated with topical steroids
· use topical imidazole in a solution or lathering preparation for pityriasis versicolor.
· Ketoconazole shampoo can be used
· . In severe cases with extensive lesions, or in cases with lesions resistant to topical treatment or in cases of frequent relapse oral therapy with either ketoconazole [400 mg single dose or 200 mg/day for 5-10 days] or itraconazole [200 mg/day for 5-7 days] is usually effective.
http://www.mycology.adelaide.edu.au/

Thursday, December 7, 2006

Patient: Khong Fay Fay

Patient Name: Khong Fay Fay
Sex: Female
Age: 26 years old


Urinary tract infections
The urinary tract is divided into:
Lower portion - urinary bladder and the urethra.
Upper portion - kidneys, renal pelves, and ureters
Upper urinary tract infections (UTIs) are most commonly ascending; they originate in the urinary bladder and ascend through the ureters to the kidneys.

The symptoms of upper UTIs are fever (often with chills) and flank pain. Frequency, urgency, and dysuria are more suggestive of infections of the urinary bladder and urethra (Lower urinary tract).

Community acquired UTI: Cystitis
Cystitis is caused bladder mucosal invasion, most often by enteric coliform bacteria (eg, Escherichia coli) that inhabit the periurethral vaginal introitus and ascend into the bladder via the urethra. Sexual intercourse may promote this migration, and cystitis is common in otherwise healthy young women.

http://www.emedicine.com/EMERG/topic626.htm

Community acquired UTI: Acute Pyelonephritis
Pyelonephritis is an ascending urinary tract infection that has reached the pyelum (pelvis) of the kidney. The causes are lower UTIs, mainly cystitis and prostatitis (but in this case, a woman does not have a prostate gland)

Williams DH, Schaeffer AJ (2004). "Current concepts in urinary tract infections". Minerva Urol Nefrol 56 (1): 15-31.


Discussion
The symptoms of upper and lower UTIs are relatively similar. Absence of catherter insertion inidcates that the UTI was not acquired in hospital. Thus the area of focus will be on community acquired UTIs. With consideration of the patient’s age and sex (26 years old female), it is highly probable that she is suffering from cystitis or acute pyelonephritis. In addition to the female urethra being shorter and nearer to the anus (anatomy), the fact that young women who are sexually active (26years old) will be more prone to cystitis (or communtiy acquired UTIs)

Small list of the common microbes related to UTI:
Escherichia coliCommon in young women, causes 80% of community-acquired UIT and 90% of the urinary tract infections (UTI) in anatomically-normal, unobstructed urinary tracts.

Staphylococcus saprophyticus - In young women, S. saprophyticus is, after Escherichia coli, the second-most-frequent causative agent of acute UTI

Proteus mirabilis - with functional or structural abnormalities or with long-term catheterization, forms bladder and kidney stones as a consequence of urease-mediated urea hydrolysis.

Pseudomonas aeruginosa - usually hospital-acquired and related to urinary tract catheterization, instrumentation or surgery


http://textbookofbacteriology.net/e.coli.html
http://iai.asm.org/cgi/content/abstract/72/5/2922
http://textbookofbacteriology.net/pseudomonas.html
Hovelius B, Mardh PA. (1984) “Staphylococcus saprophyticus as a common cause of urinary tract infections”. Rev Infect Dis. May-Jun; 6 (3): 328-37

Highly suspected microbes: Escherichia coli and Staphylococcus saprophyticus.


Tests
Dipstick tests
Dipstick tests are rapid and inexpensive, but need to be interpreted with caution. The two commonly used tests are the:

Leukocyte esterase test
Indicates pyuria by detecting esterases released from white blood cells. However, pyuria is not a specific indicator of infection.

Nitrate reduction test
Detects nitrites produced from nitrates by bacteria (mainly Gram-negative bacteria).
Dipstick tests are of most use as a negative screen



Urine cultures (subjected to overnight incubation at 37 degrees Celsius)

MacConkey Agar - mainly used in identification of lactose fermenting, Gram-negative enteric pathogens and for inhibiting growth of Gram-positive organisms. Bacterial colonies that can ferment lactose turn the medium red. This red color is due to the pH indicators response to the acidic environment created by fermenting lactose. Organisms that do not ferment lactose do not cause a color change.




Catalase test - The catalase test involves adding hydrogen peroxide to a culture sample or agar slant. If the bacteria in question produce catalase, they will convert the hydrogen peroxide and oxygen gas will be evolved. The evolution of gas causes bubbles to form and is indicative of a positive test.



Coagulase test
- for differienting between pathogenic and non-pathogenic strains of Staphylococcus. A positive test is denoted by a clot formation in the test tube after the allotted time.






Indole test - When tryptophan is broken down, the presence of indole can be detected through the use of Kovacs' reagent. Kovac's reagent, which is yellow, reacts with indole and produces a red color on the surface of the test tube.






Oxidase test
- If the bacteria oxidize the disk (remove electrons) the disk will turn purple, indicating a positive test. No color change indicates a negative test

http://medic.med.uth.tmc.edu >path >tests


Flow chart to direct the identification of serveral bacterial. (Main focus is on E. Coli)




A flow chart for the identification of Gram-Positive bacteria. (Staphylococcus saprophyticus not shown) Staphylococcus saprophyticus has the same characteristics as S. epdermidis, but Staphylococcus saprophyticus is resistant to novobiocin.

Use of Novobiocin-containing medium (sensitivity disks with 5 micro grams of novobiocin)

By demonstrating the resistance to the anti-microbial agent novobiocin, staphylococcus saprophyticus can be identified amongst the coagulase-negative staphylococcus.

http://web.indstate.edu/thcme/micro/staph/sld003.htm

Robert H. Latham, Grada A. Grootes-Reuvecamp, Dolores Zeleznik, and Walter E. Stamm. (1983). "Use of a Novobiocin-Containing Medium for Isolation of Staphylococcus saprophyticus from Urine." J Clin Microbiol. June; 17(6): 1161–1162.

-Willie-

Urinary tract infection


Patient 3
Name: Maisy Wong
Sex: Female
Age: 66 yrs
Complaints: Fever, chills, bladder distension, on indwelling catheter
Diagnosis: Urinary tract infection
Antibiotic treatment: Nil

Maisy Wong is on indwelling catheter. An indwelling urinary catheter is a tube that drains urine from the bladder into a bag. The tube is placed into the urethra (the part of the body that drains the bladder) and up into the bladder. Catheter-associated urinary tract infections are caused by a variety of pathogens, including Escherichia coli, Klebsiella, Proteus, enterococcus, Pseudomonas, Enterobacter, Serratia, and Candida. Many of these microorganisms are part of the patient's endogenous bowel flora, but they can also be acquired by cross-contamination from other patients or hospital personnel or by exposure to contaminated solutions or non-sterile equipment. Catheter-associated urinary tract infections are generally assumed to be benign. Such infection in otherwise healthy patients is often asymptomatic and is likely to resolve spontaneously with the removal of the catheter.

Microbiological Media Used
Blood Plate Agar (BAP)

Contains blood from a mammal (usually sheep), and respires to typical transperent nature, typically at a concentration of 5–10%. BAP are an enriched, differential media used to isolate fastidious organisms and detect hemolytic activity. β-hemolytic activity will show complete lysis of red blood cells surrounding colony, while α-hemolysis will only partially lyse hemoglobin and will appear green. γ-hemolysis is the term referring to a lack of hemolytic activity.


Cysteine Lactose Electrolyte Deficient Agar (CLED)
Is a valuable non-inhibitory growth medium used in the isolation and differentiation of urinary organisms. Being electrolyte deficient, it prevents the swarming of Proteus species. Lactose fermenters produce yellow colonies on CLED agar; non-lactose fermenters appear blue.

Most probable microorganisms:
Proteus mirabilis
Pseudomonas aeruginosa
E.coli
http://www.cdc.gov
http://www3.umdnj.edu

Posted by Xiu hui



Microorganisms Suspected
Patient 2: Kwan Siew Lan

1) Salmonella typhi

Description
- Facultative anaerobes
- Gram-negative rods
- Non-lactose fermentors
- Produce H2S
- Causes infection in the lining of the small intestine



Picture of Salmonella typhi taken from (http://www.nlm.nih.gov/ >
Medline > Medical Encycopedia >S-Sh > Samonella Enterocolitis)

Causes and Risk Factors
- Ingestion of contaminated food or water
- Ingestion of improperly prepared or stored food (especially undercooked turkey or chicken, unrefrigerated turkey dressing, undercooked eggs)
- Family members with recent salmonella infection
- Recent family illness with gastroenteritis
- Institutionalization
- Recent poultry ingestion
- Owning a pet iguana or other lizards, turtles, or snakes (reptiles are carriers of salmonella)
- Old or young age
- Patients with impaired immune systems
(http://www.nlm.nih.gov/ > Medline > Medical Encycopedia > S-Sh > Samonella Enterocolitis)

Transmission
- Transmitted mainly via fecal-oral rout and food prepared by chronic carriers

Signs and Symptoms
- Abdominal pain or cramping or tenderness
- Mild to severe diarrhea
- Nausea
- Vomiting
- Fever
- Chills
- Muscle pain
(http://www.nlm.nih.gov/ > Medline > Medical Encycopedia > S-Sh > Samonella Enterocolitis)


2) Campylobacter jejuni

Description
- Gram-negative “S” or “gull wing” shaped
- Motile with a single polar flagellum
- Micro-aerophillic (5%O2 with 10%O2)



Picture of Campylobacter jejuni taken from (http://www.nlm.nih.gov/ >
Medline > Medical Encycopedia > C-Cg > Campylobacter Enteritis)

Causes and Risk Factors
- Eating or drinking contaminated food or water, often raw poultry, fresh produce, or unpasteurized milk
- Close contact with infected people or animals
- Recent travel in an area of poor hygiene or sanitation
(http://www.nlm.nih.gov/ > Medline > Medical Encycopedia > C-Cg > Campylobacter Enteritis)

Transmission
- Via Faecal-oral route, contaminated food and water with animal faeces

Signs and Symptoms
- Cramping abdominal pain
- Watery diarrhea, sometimes bloody
- Fever
(http://www.nlm.nih.gov/ > Medline > Medical Encycopedia > C-Cg > Campylobacter Enteritis)

3) Vibrio parahaemolyticus

Description
- Curved, comma-shaped gram-negative rods
- Highly motile with polar flagella
- Grow well at alkaline pH (8.5-9.5)
- Halophillic bacteria that grow well in high NaCl concentration

Picture of Vibrio parahaemolyticus taken from

Causes and Risk Factors
- Eating raw or undercooked shellfish, particularly oysters
- Infection in the skin when an open wound is exposed to warm seawater
- Persons with weakened immune systems
(http://www.cdc.gov > Diseases and Conditions > V > Vibrio parahaemolyticus Infection)

Signs and Symptoms
- watery diarrhea with abdominal cramping
- nausea
- vomiting
- fever
- chills
(http://www.cdc.gov > Diseases and Conditions > V > Vibrio parahaemolyticus Infection)


REASONS
Samonella typhi, Campylobacter jejuni and Vibrio parahaemolyticus commonly cause enterocolitis or some form of infection in the intestine with the symptom of diarrhea of varying degrees.
Posted by Melva
The microbe that I highly suspected are listed below:
Bacteria


















Virus
















www.aggie-horticulture.html
Plates used
· Blood plate agar (BAP): Blood Plate agar contains blood from a mammal (usually sheep), and respires to typical transperent nature, typically at a concentration of 5–10%. BAP are an enriched, differential media used to isolate fastidious organisms and detect hemolytic activity. β-hemolytic activity will show complete lysis of red blood cells surrounding colony, while α-hemolysis will only partially lyse hemoglobin and will appear green. γ-hemolysis is the term referring to a lack of hemolytic activity.

· Salmonella-Shigella Agar modified (SS): Beef Extract, Enzymatic Digest of Casein, and Enzymatic Digest of Animal Tissue found in SS plate provide sources of nitrogen, carbon, and vitamins required for organism growth. Lactose is the carbohydrate present in Salmonella Shigella Agar. Bile Salts, Sodium Citrate and Brilliant Green inhibit Gram-positive bacteria, most coliform bacteria, and inhibit swarming Proteus spp., while allowing Salmonella spp. to grow. Sodium Thiosulfate and Ferric Citrate permit detection of hydrogen sulfide by the production of colonies with black centers. Neutral Red is the pH indicator.

· Campylobacter Selective medium: A blood free medium, which will support the growth of enteric Campylobacter species. The selective supplements cefaperazone and amphotericin make the medium selective for Campylobacter jejuni and Campylobacter laridis when incubated at 37°C. Incubation at 42°C is no longer necessary and higher recovery rates have been reported at 37°C. Blood is replaced in the medium with charcoal, ferrous sulphate and sodium pyruvate, which enhance the growth and aerotolerance of Campylobacter species.

· MacConkey Agar (MAC): MacConkey agar is a differential plating medium recommended for use in the isolation and differentiation of lactose-fermenting organisms from nonfermenting Gram-negative enteric bacteria. It is selective by the presence of specific inhibitors.

· Thiosulphate-citrate bile sucrose agar (TCBS): A selective isolation medium for pathogenic Vibrio species. Most Enterobacteriaceae other than Vibrio species are suppressed for at least 24h. Bile salts inhibit Gram-positive organisms. Sodium thiosulphate serves as a source of sulphur, which, in combination with ferric citrate, detects hydrogen sulphide production. When sucrose is fermented it produces acid changing the pH. This is indicated by bromothymol blue and thymol blue. The medium is also alkaline which enhances the recovery of Vibrio cholerae.

· Selenite broth: Selenite Broth contains enzymatic digest of casein and enzymatic digest of animal tissue that provides nitrogen and vitamin sources. The main carbohydrate that is present in the broth is lactose. Lactose is the fermentable carbohydrate. Sodium Phosphate in the broth acts as a buffer. A rise in pH decreases selective activity of Selenite. The acid produced by lactose fermentation helps to maintain a neutral pH. Sodium Selenite inhibits the growth of Gram-positive bacteria and many Gram-negative bacteria.

· Alkaline peptone water (APW): Alkaline Peptone Water is an enrichment medium used for the cultivation of Vibrio species from feces and other infected materials. Clinical materials containing small numbers of Vibrio should be inoculated into an enrichment medium prior to plating onto a selective medium, such as TCBS Agar. Alkaline Peptone Water is a suitable enrichment broth for this purpose. The relatively high pH of the medium (approximately 8.4) provides a favorable environment for the growth of vibrios.

· Cefsulodin-Irgasan-Novobiocin (CIN) agar for Yersinia enterocolitica: Cefsulodin-Irgasan-Novobiocin (CIN) agar is a differential and selective medium for the isolation of Yersinia enterocolitica. Fermentation of mannitol in the presence of neutral red produces characteristic "bull's-eye" colonies. These are colourless with a red centre. A zone of precipitated bile may also be present. Crystal violet, sodium desoxycholate, cefsulodin, Irgasan (triclosan) and novobiocin are inhibitory agents.

· Sorbitol MAC for enterohaemorrhagic E.coli: Sorbitol MacConkey Agar medium contains sorbitol instead of lactose and it is recommended for the detection of enteropathogenic strains of E. coli, which ferments lactose, but does not ferment sorbitol and hence produce colorless colonies. Sorbitol fermenting strains of E. coli 0157:H7 produce pink-red colonies. The red colour is due to production of acid from sorbitol, absorption of neutral red and a subsequent colour change of the dye when pH of the medium falls below 6.8.

· Loeffler’s methylene blue: This solution is a solution that can be used alone as a simple stain, positive stain or as the counterstain in the acid fast stain procedure (Ziehl-Nielsen). It can also be used in the staining procedure that detects metachromatic granules (volutin).

· Enterococcosel Agar with 6 microgram / ml of vancomycin (VRE): Enterococcosel Agar Enterococcosel Agar incorporates Bile Esculin Azide Agar to yield rapid, selective detection and enumeration of enterococci. The surveillance for Vancomycin-Resistant Enterococci (VRE) can be accomplished by plating stool cultures onto Enterococcosel Agar with Vancomycin (6 µg/mL).


Microscopy
A wet preparation is examined for the presence of leucocytes and erythrocytes. Their presence may indicate invasive disease. This test is only done on request as its usefulness is limited.

1. Place a drop of liquid faeces or saline suspension of the faecal specimen on a microscope slide. Any mucous or flecks of pus or blood that may be present should be included in the suspension as these are likely to harbour disease causing organisms
2. Mix 1 drop of Loeffler’s methylene blue stain with the faeces specimen. Note that there must be an equal volume of faeces to stain.
3. Place a cover slip over it.
4. Wait 2 – 3 minutes for the nuclei to stain and then read the preparation under high power on (40x)
5. Observe for predominating numbers of white blood cells (WBCs), which indicate an invasive pathogen.

Culture
Inoculated places are O2 incubated unless otherwise indicated in the table.

All faeces are inoculated onto the following media: BAP, MAC, SS, Selenite broth and Campylobacter selective agar for the isolation of salmonella, Shigella and Campylobacter spp.

In addition to the above:
· Bloody faeces are also inoculated onto Sorbitol MAC plate.
· Watery faeces are plated on TCBS and inoculated onto APW to culture for Vibrio spp.


After culturing, gram staining is performed to differentiate gram positive (purple) and negative (pink). Gram negative bacteria includes gram negative cocci, bacilli and coccibacilli while positive includes gram positive cocci and bacilli.


posted by huiling

Wednesday, December 6, 2006

Patient 5

Patient 5
Name: Wong Wei Hong
Sex: Male
Age: 67 years
Complaints: Fever, chills, bladder distension; on indwelling catheter
Diagnosis: Urinary Tract Infection
Antibiotic treatment: Nil
Specimen: Urine

Definition
Urinary Tract Infection, or known as UTI, is an infection affecting one or more components of the urinary tract, which consists of two kidneys, two ureters, a bladder and a urethra.

Cause of Infection
A possible way for this patient to be infected with UTI is through the insertion of the indwelling catheter into his bladder. The purpose of inserting the indwelling catheter is to allow the drainage of urine out of the bladder. This would indicate to us that the patient might be suffering from a kidney disorder, as he cannot empty his bladder.

However, the use of a catheter may physically disturb the protective lining of the bladder wall, thus allowing bacteria to invade the exposed epithelium In addition to this, when the catheter is not thoroughly sterile, this could cause microorganisms to be present on the surface of the catheter upon insertion into the bladder. This would allow the bacteria to proliferate inside the bladder and thus resulting in the patient to develop a UTI infection.

Investigation Required
Urinalysis
It involves a physical and chemical examination of urine. In addition, the urine is spun in a centrifuge to allow sediments containing blood cells, bacteria, and other particles to collect. This sediment is then examined under a microscope. A urinalysis offers a number of valuable clues for an accurate diagnosis by,

• Observing the colour of the urine and presence of cloudiness (if any)
• Measuring the acidity of the urine
• Counting the number of leukocytes, which is indicative of UTI



Urine Culture
The procedure to detect for any bacterial growth in the urine is called a urine culture. This method involves the inoculation of the urine specimen onto agar mediums. The mediums required are Blood Agar, MacConkey Agar and Cysteine Lactose Electrolyte Deficient (CLED) Agar. The inoculated specimen is then streaked on the respective plates.

Blood Agar contains general nutrients and 5% sheep blood and it is useful for cultivating fastidious organisms and for determining the hemolytic capabilities of an organism.

MacConkey Agar is a differential medium used to isolate and distinguish lactose-fermenting organisms from non-fermenting Gram-negative enteric bacteria.

CLED Agar is a selective medium and inhibits swarming of Proteus species. In addition to this, they promote the growth of Candida and prevent the growth of pseudomonal.

All the 3 agar mediums will then be placed in an O2 incubator and left overnight before they are read the following day. If the Blood Agar shows a ‘swarming’ effect, this would probably indicate that the microorganism is Proteus mirabilis.

Gram Staining
After a urine culture has been performed, a Gram stain would be done using the isolated colonies from any of the agar mediums. This would help to identify if the microorganism is a Gram-positive cocci (GPC) or a Gram-Negative bacilli (GNB). Under microscopy, a GPC would appear bluish or purplish in colour and the cells would be circular. On the other hand, a GNB would turn out reddish or pinkish in colour while the cells would appear rod-shaped.

Biochemical Tests
After Gram staining has been, a few biochemical tests would be done to determine the suspected microorganism. A GNB would normally be an Escherichia Coli (E. coli) and to prove this, an oxidase test is done. E. coli would turn out to be oxidase negative. A GPC would most likely turn out to be a staphylococcus species, and a microorganism under this species would be Staphylococcus aureus. And to determine if the microorganism is likely to be Staphylococcus aureus, a latex test is done. This micro organism would be latex positive.

Antibiotic Susceptibility Test
After the microorganism has been classified, an antibiotic susceptibility test would be carried out to determine the antibiotics that the microorganism is sensitive to. This would allow the physician to prescribe the necessary antibiotics to the patient. In the event that the microorganism is resistant to majority of the antibiotics, stronger types of antibiotics would be given.

Suspected Organisms
Some of the suspected organisms that could lead to a UTI infection are listed as follows.

1) Escherichia coli
2) Proteus mirabilis
3) Pseudomonas aeruginosa
4) Staphylococcus aureus



References

http://www.reutershealth.com/
http://calder.med.miami.edu/
http://dentistry.ouhsc.edu/
http://en.wikipedia.org


Posted by Farhan